A B C D E F G H I J K L M N O P Q R S T U V W Z

A

ABORTED - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.server.StatusCode

AbstractCellEditor - Class in uk.ac.rdg.resc.jstyx.client.browser

AbstractCellEditor() - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

AbstractTreeTableModel - Class in uk.ac.rdg.resc.jstyx.client.browser

An abstract implementation of the TreeTableModel interface, handling the list of listeners.

AbstractTreeTableModel() - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

Constructs the AbstractTreeTableModel.

add(Object) - Method in class uk.ac.rdg.resc.jstyx.infernogrid.Sexpression

Adds a token (an atom or another Sexpression) to this Sexpression

addCellEditorListener(CellEditorListener) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

addChangeListener(CStyxFileChangeListener) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Adds a CStyxFileChangeListener to this file.

addChangeListener(SGSChangeListener) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Adds a new SGSChangeListener to the list of registered change listeners.

addChangeListener(SGSInstanceClientChangeListener) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Adds a listener that will be notified of changes to this SGS.

addChangeListener(StyxFileChangeListener) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Registers a StyxFileChangeListener.

addChild(StyxFile) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Adds a file to this directory.

addClient(StyxFileClient) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Adds the given client to the file's list of connected clients.

addListener(StyxConnectionListener) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Adds a StyxConnectionListener to this connection.

addNewConnection(StyxConnection) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorerTreeModel

Adds a new connection to a server to this tree model

addPathElement(String) - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

Add an element to the array of path elements

addTreeModelListener(TreeModelListener) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

allOutputDataDownloaded() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when all the output data have been downloaded

allOutputDataDownloaded() - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when all the output data have been downloaded

allOutputDataDownloaded() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when all the output data have been downloaded

allOutputDataDownloaded() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Called when all the output data have been downloaded

allowsAnonymousLogin() - Method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

ANONYMOUS_USER - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

The username for an anonymous user

asBigInteger() - Method in class uk.ac.rdg.resc.jstyx.types.ULong

asLong() - Method in class uk.ac.rdg.resc.jstyx.types.ULong

asLsEntry() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

Formats the dirEntry as a string similar to how it appears with an "ls -l" command in Inferno

AsyncStyxFile - Class in uk.ac.rdg.resc.jstyx.server

A wrapper for a StyxFile that implements asynchronous behaviour: the first read from a given client returns the file's data as normal.

AsyncStyxFile(StyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Creates a new AsyncStyxFile with the same name as the underlying file.

AsyncStyxFile(StyxFile, String) - Constructor for class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

AsyncStyxFile(StyxFile, String, int) - Constructor for class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

AsyncStyxFile(StyxFile, String, int, boolean, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

auth - Variable in class uk.ac.rdg.resc.jstyx.server.StyxFile

AuthFile - Class in uk.ac.rdg.resc.jstyx.server

StyxFile that is used to exchange authentication information.

AuthFile(StyxSecurityContext, String) - Constructor for class uk.ac.rdg.resc.jstyx.server.AuthFile

Creates a new instance of AuthFile

available() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStream

B

baseFile - Variable in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Benchmark - Class in uk.ac.rdg.resc.jstyx.client

Program that compares the downloading of a file via HTTP and Styx, with various message sizes

Benchmark() - Constructor for class uk.ac.rdg.resc.jstyx.client.Benchmark

buf - Variable in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

buf - Variable in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

The org.apache.mina.common.ByteBuffer that holds the data exposed by this file.

C

CachedStreamReader - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Reads a CStyxFileInputStream and caches the results locally, allowing multiple windows to be opened on the same data feed whilst saving network traffic

CachedStreamReader(CStyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.CachedStreamReader

cancelCellEditing() - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

candidateURL - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

candidateURLBuffer - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

candidateURLLength - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

canRead() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

Checks to see if the client can read from this file (i.e.

canWrite() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

Checks to see if the client can write to this file (i.e.

checkArgs(String[]) - Static method in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

Checks the command-line arguments, throwing an Exception if there is a problem

checkArguments(String[]) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Checks the command-line arguments: makes sure they can be parsed and checks for the existence of all input files

checkSetLastModifiedTime(long) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

checkSetLength(ULong) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

This method is overridden to return a more meaningful error message.

checkSetLength(ULong) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Check to see if the length of this file can be changed to the given value.

checkSetMode(long) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Checks to see if this file allows the mode (permissions plus flags) of the file to be changed.

checkSetName(String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

checkValid() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

Checks to see if the contents of this file are valid.

childExists(String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

childrenFound(CStyxFile, CStyxFile[]) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called after a successful read on a directory.

childrenFound(CStyxFile, CStyxFile[]) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called after a successful read on a directory.

client - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader.DataRequest

CLIENT_MODE - Static variable in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloperProtocolProvider

clientConnected(StyxFileClient) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Called after a client connects to this file (i.e.

clientDisconnected(StyxFileClient) - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Called when a client disconnects from the file.

clientDisconnected(StyxFileClient) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Called after a client disconnects from this file (i.e.

close() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Closes the file (i.e.

close() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStream

Closes the stream (clunks the underlying file).

close() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileOutputStream

Closes the file stream (i.e.

close() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Overrides the close() method in Session.

close() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Closes the underlying StyxConnection

close() - Method in class uk.ac.rdg.resc.jstyx.infernogrid.SexpParser

Closes the underlying InputStream

closeOutput() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

Closes the output file or stream.

closeOutput() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.File

closeOutput() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.StdinFile

cNames - Static variable in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

compareElementsAt(int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

connect() - Method in class uk.ac.rdg.resc.jstyx.client.protocol.styx.StyxURLConnection

connect() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Connects to the remote server and handshakes.

connect() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Connects to the SGS server and downloads the configuration of this SGS.

connectAsync() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Connects to the remote server and handshakes.

connectionClosed(StyxConnection) - Method in interface uk.ac.rdg.resc.jstyx.client.StyxConnectionListener

Called when the connection has been closed

connectionClosed(StyxConnection) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorer

Required by StyxConnectionListener interface.

connectionClosed(StyxConnection) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Called when the connection to the SGS instance has been closed

connectionError(StyxConnection, String) - Method in interface uk.ac.rdg.resc.jstyx.client.StyxConnectionListener

Called when an error has occurred when connecting.

connectionError(StyxConnection, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorer

Required by StyxConnectionListener interface.

connectionError(StyxConnection, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Called when an error has occurred when connecting.

connectionReady(StyxConnection) - Method in interface uk.ac.rdg.resc.jstyx.client.StyxConnectionListener

Called when the relevant handshaking has been performed and the connection is ready for Styx messages to be sent

connectionReady(StyxConnection) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorer

Required by StyxConnectionListener interface.

connectionReady(StyxConnection) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Called when the relevant handshaking has been performed and the connection is ready for Styx messages to be sent.

contentsChanged() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Call this to indicate that the file's data have changed.

count - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader.DataRequest

createAsync(boolean, int, int, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Creates this file on the remote server, provided that its parent directory exists.

CreateCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback used when creating a file (see CStyxFile.createAsync())

CreateCallback(CStyxFile, boolean, int, int, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.CreateCallback

createChild(String, int, boolean, boolean, boolean) - Method in class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

Creates a new file and adds it to this directory.

createChild(String, int, boolean, boolean, boolean) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Creates a new file to be added to this directory.

CREATED - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.server.StatusCode

createFileObject(File, String) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

createFileObject(String) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

createFileOrDirectory(File, boolean, int) - Static method in class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

Creates a file or directory, wraps it as a StyxFile with the given permissions and returns it

createFileSystemRoot(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

createNewFolder(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Creates a new folder with a default folder name

createNewInstance() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Requests creation of a new instance of the SGS on the server.

createNewServiceInstance() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Creates a new service instance

createStyxMessage(int, short, int) - Static method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Static factory method for creating a StyxMessage.

CStyxFile - Class in uk.ac.rdg.resc.jstyx.client

A Styx file (or directory) from the point of view of the client.

CStyxFileChangeAdapter - Class in uk.ac.rdg.resc.jstyx.client

Convenience class that provides empty implementations for all the methods in CStyxFileChangeListener.

CStyxFileChangeAdapter() - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

CStyxFileChangeListener - Interface in uk.ac.rdg.resc.jstyx.client

Interface defining methods that will be fired when messages pertaining to a StyxFile arrive at the client (e.g.

CStyxFileInputStream - Class in uk.ac.rdg.resc.jstyx.client

InputStream for reading from a file on a Styx server

CStyxFileInputStream(CStyxFile, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStream

Creates a CStyxFileInputStream for reading the given file.

CStyxFileInputStream(CStyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStream

CStyxFileInputStreamReader - Class in uk.ac.rdg.resc.jstyx.client

Convenience class for reading character data from a Styx input stream.

CStyxFileInputStreamReader(InputStream) - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStreamReader

Creates a new instance of StyxFileReader

CStyxFileOutputStream - Class in uk.ac.rdg.resc.jstyx.client

Output stream for writing data to a Styx File.

CStyxFileOutputStream(CStyxFile, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileOutputStream

Creates a new CStyxFileOutputStream to write data to the given CStyxFile.

CStyxFileOutputStream(CStyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileOutputStream

Creates a new CStyxFileOutputStream to write data to the given CStyxFile.

CStyxFileOutputStreamWriter - Class in uk.ac.rdg.resc.jstyx.client

Convenience class for reading character data from a Styx input stream.

CStyxFileOutputStreamWriter(CStyxFileOutputStream) - Constructor for class uk.ac.rdg.resc.jstyx.client.CStyxFileOutputStreamWriter

Creates a new instance of StyxFileReader

cTypes - Static variable in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

D

dataArrived(CStyxFile, TreadMessage, ByteBuffer) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called when new data have been read from the file (after the Rread message arrives).

dataArrived(CStyxFile, TreadMessage, ByteBuffer) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called when new data have been read from the file (after the Rread message arrives).

dataArrived(CStyxFile, TreadMessage, ByteBuffer) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Required by the CStyxFileChangeListener interface

dataArrived(CStyxFile, TreadMessage, ByteBuffer) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

This is called when we have read data asynchronously using readDataAsync().

dataToString(ByteBuffer) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Gets the remaining contents of the given ByteBuffer (i.e.

dataToString(ByteBuffer) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Gets the remaining contents of the given java.nio.ByteBuffer (i.e.

dataUploadComplete() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.File

dataWritten(CStyxFile, TwriteMessage) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called when data have been written to the file (after the Rwrite message arrives).

dataWritten(CStyxFile, TwriteMessage) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called when data have been written to the file (after the Rwrite message arrives).

dataWritten(CStyxFile, TwriteMessage) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Required by the CStyxFileChangeListener interface.

dataWritten - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

decode(ProtocolSession, ByteBuffer, ProtocolDecoderOutput) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessageDecoder

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RattachMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RauthMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RclunkMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RflushMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RremoveMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RstatMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RwstatMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Called when a complete message has arrived; signals that we are ready to interpret the raw bytes in the buffer and turn them into meaningful information.

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TflushMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TstatMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

decodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

DEFAULT_GROUP - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

When a client creates a file on the Styx server, this is the default group for the file.

delete() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

Called when the file is removed from the server.

delete() - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Free all resources associated with this file

delete() - Method in class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

Removes the underlying directory from the disk

delete() - Method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Closes the open FileChannel and removes the underlying file from the disk

delete() - Method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

Frees the resources associated with the file (releases the underlying ByteBuffer back to the pool).

delete() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Called when the file is removed from the server.

deleteOnClunk() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

destSockAddr - Variable in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

dir - Variable in class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

directory - Variable in class uk.ac.rdg.resc.jstyx.server.StyxFile

DirectoryOnDisk - Class in uk.ac.rdg.resc.jstyx.server

Class representing a directory on a hard disk (i.e.

DirectoryOnDisk(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

DirectoryOnDisk(File) - Constructor for class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

DirEntry - Class in uk.ac.rdg.resc.jstyx.types

A directory entry on a Styx server (i.e.

DirEntry(int, long, Qid, long, long, long, ULong, String, String, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.types.DirEntry

Creates a new instance of DirEntry.

DirEntry(Qid, long, long, long, ULong, String, String, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.types.DirEntry

This constructor is most useful when creating a DirEntry from a StyxFile

displayData(InputStream) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TextDisplayer

Reads all the data from the input stream and displays in the text area

dispose() - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

This is called after the message has been sent (in StyxServerProtocolHandler.messageSent().

dispose() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

This is called after the message has been sent (in StyxServerProtocolHandler.messageSent()) and is a signal to free any resources associated with the message (e.g.

DMAPPEND - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

DMAUTH - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

DMDIR - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

DMEXCL - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

DocFile - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Description of DocFile goes here.

DocFile(String, String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.DocFile

download(File) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Downloads the data from this file and writes to a local java.io.File.

download(File, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Downloads the data from this file and writes to a local java.io.File.

downloadAsync(File, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Downloads the data from this file and writes to a local java.io.File.

downloadAsync(File) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Downloads the data from this file and writes to a local java.io.File.

downloadAsync(File, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Downloads the data from this file and writes to a local java.io.File.

downloadAsync(File, int, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Downloads the data from this file and writes to a local java.io.File.

DownloadCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback that is used when downloading a file from the server.

DownloadCallback(CStyxFile, File, int, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.DownloadCallback

downloadComplete(CStyxFile) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called after a file has been successfully downloaded

downloadComplete(CStyxFile) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called after a file has been successfully downloaded

E

encode() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Called by StyxMessageEncoder when we are about to send a message.

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RattachMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RauthMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RclunkMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RflushMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

Writes the message into the given StyxBuffer.

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RremoveMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RstatMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.RwstatMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Encode the body of the message into bytes in the underlying buffer

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TflushMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TstatMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

Writes the message into the given StyxBuffer.

encodeBody(StyxBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

eofWritten - Variable in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

equals(Qid) - Method in class uk.ac.rdg.resc.jstyx.types.Qid

equals(Object) - Method in class uk.ac.rdg.resc.jstyx.types.ULong

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.CreateCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.DownloadCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.GetChildrenCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.GetFidCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.OpenCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.OpenOrCreateCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.ReadCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.RefreshCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.UploadCallback

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.WriteCallback

error(CStyxFile, String) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called when an Rerror message arrives

error(CStyxFile, String) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called when an Rerror message arrives

error(String, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.MessageCallback

Called when an error occurs (this may occur if the server returned an Rerror message, or if the reply was not of the expected type, or for other reasons).

error(GeneralCachingStreamReader.DataRequest, Exception) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.CachedStreamReader

error(String) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSChangeListener

Fired when an error has occurred

error(CStyxFile, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

This callback is called if there has been an error with one of the asynchronous methods

error(CStyxFile, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Required by the StyxFileChangeListener interface.

error(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when an error occurs

error(String) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when an error occurs

error(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when an error occurs.

error(GeneralCachingStreamReader.DataRequest, Exception) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

ERROR - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.server.StatusCode

exceptionCaught(ProtocolSession, Throwable) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Called when an exception is caught by MINA; fires the connectError() event on all registered listeners and closes the connection.

exceptionCaught(ProtocolSession, Throwable) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

execute(JobExecutionContext) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.InstanceTerminatorJob

This method is called when the SGS instance is to be deleted

exists() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Tests to see if this file exists on the server, returning true if so and false if not.

ExitCodeFile - Class in uk.ac.rdg.resc.jstyx.gridservice.server

File that is read in order to get the exit code from the service instance.

ExitCodeFile() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.ExitCodeFile

Creates a new instance of ExitCodeFile

F

FILE - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSInput

FILE - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSOutput

file - Variable in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

FILE_FROM_PARAM - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSInput

FILE_FROM_PARAM - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSOutput

fileContentsChanged(boolean) - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Called to notify that the underlying data have changed.

fileContentsChanged() - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

This is called when the contents of the underlying StyxFile are changed (required by StyxFileChangeListener interface).

fileContentsChanged() - Method in interface uk.ac.rdg.resc.jstyx.server.StyxFileChangeListener

This method will be called when the contents of the file have changed.

fileCreated(CStyxFile, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called when the file has been created.

fileCreated(CStyxFile, int) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called when the file has been created.

FileOnDisk - Class in uk.ac.rdg.resc.jstyx.server

Class representing a file on a hard drive.

FileOnDisk(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Creates a new FileOnDisk that wraps the file at the given path

FileOnDisk(File) - Constructor for class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Creates a new FileOnDisk whose name is the same as that of (the last part of) the underlying file (i.e.

FileOnDisk(String, File) - Constructor for class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Creates a FileOnDisk with the default permissions (0666, rw-rw-rw-)

FileOnDisk(File, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Creates a FileOnDisk with default permissions (0666).

FileOnDisk(String, File, int, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.FileOnDisk

fileOpen(CStyxFile, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called when the file has been opened.

fileOpen(CStyxFile, int) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called when the file has been opened.

fileOpen(CStyxFile, int) - Method in class uk.ac.rdg.resc.jstyx.client.TestClient

FileWrapper - Class in uk.ac.rdg.resc.jstyx.client

Wraps a CStyxFile as a java.io.File.

FileWrapper(CStyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.client.FileWrapper

Creates a new instance of FileWrapper that wraps the given CStyxFile.

FINISHED - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.server.StatusCode

fireChildrenFound() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the childrenFound() method on all registered listeners

fireContentsChanged() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

This method is called when the contents of the file change.

fireCreated() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the fileCreated() method on all registered listeners

fireDataArrived(TreadMessage, RreadMessage) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the dataArrived() method on all registered listeners

fireDataWritten(TwriteMessage) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the dataWritten() method on all registered listeners

fireDownloadComplete() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the downloadComplete() method on all registered listeners

fireEditingCanceled() - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

Notify all listeners that have registered interest for notification on this event type.

fireEditingStopped() - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

Notify all listeners that have registered interest for notification on this event type.

fireError(String) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the error() method on all registered listeners

fireOpen() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the fileOpen() method on all registered listeners

fireStatChanged(RstatMessage) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the statChanged() method on all registered listeners

fireTreeNodesChanged(Object, Object[], int[], Object[]) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

fireTreeNodesInserted(Object, Object[], int[], Object[]) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

fireTreeNodesRemoved(Object, Object[], int[], Object[]) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

fireTreeStructureChanged(Object, Object[], int[], Object[]) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

fireUploadComplete() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Fires the uploadComplete() method on all registered listeners

flip() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Flip the underlying buffer

flush() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileOutputStream

Flushes the internal buffer and forces any buffered output bytes to be written

formatAsXsdDateTime(Date) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Returns a date formatted according to the xsd:dateTime data type

G

GeneralCachingStreamReader - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Abstract class that reads from an InputStream in a separate thread, caching the results to the local hard disk.

GeneralCachingStreamReader() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

GeneralCachingStreamReader.DataRequest - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Class representing a client that is waiting for data

GeneralCachingStreamReader.DataRequest(Object, long, int) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader.DataRequest

get() - Method in class uk.ac.rdg.resc.jstyx.client.StyxGet

getAbsoluteFile() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getAbsolutePath() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getAfid() - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

getAfid() - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

getAname() - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

getAName() - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

getAnonymousUser() - Method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

getAQid() - Method in class uk.ac.rdg.resc.jstyx.messages.RauthMessage

getArguments() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Gets the command line arguments that will be executed.

getArgumentsAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends a message to get the command line arguments that will be executed.

getBaseFile() - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Gets the StyxFile that is wrapped by this AsyncStyxFile

getBuffer() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Gets the underlying ByteBuffer

getBuffer() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getBytes() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

getBytes() - Method in class uk.ac.rdg.resc.jstyx.types.ULong

getCacheFile() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

Gets the File that is being used to cache the contents of the stream

getCacheLength() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

Gets the size of the cache in bytes

getCacheLocation() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

getCanonicalFile() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getCanonicalPath() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getCellEditorValue() - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

getChild(Object, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getChild(File, String) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

getChild(String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Gets the child with the given name or null if it does not exist

getChildCount(Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getChildren(Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getChildren() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets all the children of this directory.

getChildren() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Gets all the direct descendants of this directory

getChildrenAsync() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads this directory to get all its children.

GetChildrenCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback that is used when reading the children of a directory.

GetChildrenCallback(CStyxFile, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.GetChildrenCallback

getClient(ProtocolSession, long) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Gets the StyxFileClient associated with the given Session and fid, or null if client does not exist

getCodecFactory() - Method in class uk.ac.rdg.resc.jstyx.client.StyxClientProtocolProvider

getCodecFactory() - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloperProtocolProvider

getCodecFactory() - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolProvider

getColumnClass(int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

getColumnClass(int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getColumnClass(int) - Method in interface uk.ac.rdg.resc.jstyx.client.browser.TreeTableModel

Returns the type for column number column.

getColumnClass(int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

getColumnCount() - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getColumnCount() - Method in interface uk.ac.rdg.resc.jstyx.client.browser.TreeTableModel

Returns the number ofs availible column.

getColumnCount() - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

getColumnName(int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getColumnName(int) - Method in interface uk.ac.rdg.resc.jstyx.client.browser.TreeTableModel

Returns the name for column number column.

getColumnName(int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

getCommand() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getCommandLineFragment() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

getConfig() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Reads the configuration file from the server so that we know how to parse parameters, deal with input files etc.

getConfigXMLForClient() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getConnection() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getConnection() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

getConnection() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Gets the underlying connection object

getConnection() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSServerClient

getContents() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads the entire contents of the file and returns them as a String.

getContents(String) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Gets the entire contents of a file as a single string.

getContents() - Method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

Gets the data in this file as a String

getCount() - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

getCount() - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

getCount() - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

getCStyxFile() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getData() - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

getData(int) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Gets a chunk of data from the buffer.

getData() - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

getDataSummary(int, ByteBuffer) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

getDataSummary(int, byte[]) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

getDefaultDirectory() - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Simply calls getHomeDirectory();

getDescription() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Gets the short description of this Styx Grid Service.

getDescription() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getDev() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getDirEntry() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getDirEntry() - Method in class uk.ac.rdg.resc.jstyx.messages.RstatMessage

getDirEntry() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getDirEntry() - Method in class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

getDirEntry() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getDocFiles() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getEditingRow() - Method in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RattachMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RauthMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RclunkMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RflushMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RremoveMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RstatMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.RwstatMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TflushMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TstatMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

getElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TstatMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

getFid() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

GetFidCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

A callback object used to get a fid for a CStyxFile.

GetFidCallback(CStyxFile, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.GetFidCallback

getFile(Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getFile(String) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets a reference to a file on the same connection as this CStyxFile.

getFile(String) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Gets a CStyxFile with the given path.

getFileLength() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getFileName() - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

getFileName() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getFileOrDirectoryOnDisk(File) - Static method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Gets a StyxFile that wraps the given java.io.File.

getFilePath() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SDEConfig

getFilePath() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.Steerable

getFiles(File, boolean) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

gets the list of files in the given directory

getFileSystemView() - Static method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

getFreeFid() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

getFullName() - Method in class uk.ac.rdg.resc.jstyx.server.User

getFullPath() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Gets the full path relative to the root of this file system, or a single slash if this is the root directory.

getFullPath() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Gets the full path relative to the root of this file system.

getGroup() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getGroup() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getGroup() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getGUI(SGSInstanceClient) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

getHandler() - Method in class uk.ac.rdg.resc.jstyx.client.StyxClientProtocolProvider

getHandler() - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloperProtocolProvider

getHandler() - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolProvider

getHomeDirectory() - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

getHostAddress() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

getIndexOfChild(Object, Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

getInitialValue() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.Steerable

getInputFile() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

getInputs() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getInputs() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getInputStream() - Method in class uk.ac.rdg.resc.jstyx.client.protocol.styx.StyxURLConnection

getInputStream() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

getInstance() - Static method in class uk.ac.rdg.resc.jstyx.messages.StyxCodecFactory

getInstance(boolean, String) - Static method in class uk.ac.rdg.resc.jstyx.ssl.JonSSLContextFactory

Get SSLContext singleton.

getInstanceFile(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Gets a file that represents the root of the SGS instance with the given ID.

getInstanceID() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getInstanceRoot() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getInstancesAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Sends message to get all the instances of this SGS.

getIoUnit() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getIoUnit() - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

getIoUnit() - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

getJSAPParameter() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

getKeystoreLocation() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

getLastAccessTime() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getLastModified() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getLastModifiedBy() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getLastModifiedTime() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getLength() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getLength() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.File

getLength() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSOutputFile

getLength() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getLength() - Method in class uk.ac.rdg.resc.jstyx.server.URLFile

getLocation() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.DocFile

getLogger() - Static method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getMaxMessageSize() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

getMaxMessageSize() - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

getMaxMessageSize() - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

getMessage() - Method in class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

getMinUpdateInterval() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SDEConfig

getMode() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getMode() - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

getMode() - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

getMode() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getName() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets the name of the file, i.e.

getName() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Gets the name of the file, i.e.

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.CachedStreamReader

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.DocFile

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SDEConfig

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSInput

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSOutput

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

getName() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.Steerable

getName() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getName() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

getName() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getNewFid() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

getNextFileToRead() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

getNextSexp() - Method in class uk.ac.rdg.resc.jstyx.infernogrid.SexpParser

getNumBytesWritten() - Method in class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

getNumChildren() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Gets the number of direct descendants of this directory

getNumClients() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getNumPathElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

getNumSuccessfulWalks() - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

getObject(byte[]) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

getOffset() - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

getOffset() - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

getOffset() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

getOldTag() - Method in class uk.ac.rdg.resc.jstyx.messages.TflushMessage

getOutputFile() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

getOutputFileNames() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Gets the names of all the output files

getOutputFileURL(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getOutputs() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getOutputStream() - Method in class uk.ac.rdg.resc.jstyx.client.protocol.styx.StyxURLConnection

getOwner() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getOwner() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getOwner() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getParameter() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

getParameters() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getParameterValue() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

getParamParser() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getParams() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getParent() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getParent() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Returns the parent of this directory.

getParent() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Returns the parent of this file.

getParentDirectory(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

getParentFile() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

getParentPath() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets the full path of the parent of this file

getPath() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets the full path of the file

getPath() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Gets the full path of the file.

getPath() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

getPath() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

getPathElements() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

getPerm() - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

getPermissions() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getPermissionsAsString() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

Gets the file permissions as a string (e.g.

getPort() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

getPosition() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Gets the current position of the stream (i.e.

getQid() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getQid() - Method in class uk.ac.rdg.resc.jstyx.messages.RattachMessage

getQid() - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

getQid() - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

getQid(int) - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

getQid() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getQid() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getQid() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getRemoteHost() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

getRemotePort() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

getRoot() - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

getRoot() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.StyxGridService

getRootDirectory() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Gets the CStyxFile representing the root directory of the remote Styx server

getRootFid() - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

getRoots() - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Gets the root of the remote Styx server, as a (single-membered) array of FileWrappers that wraps the CStyxFile that represents the root of the server

getRowCount() - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

getServerClient(String, int) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSServerClient

Static factory method for creating an SGSServerClient.

getServerConfig() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getServiceData() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getServiceDataNames() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getServiceDataValues() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Gets the values of all service data elements as a Hashtable, in which the keys are the service data element names (Strings) and the values are the service data values (also Strings).

getSession() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

getSGSClient(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSServerClient

Gets an SGSClient object for a given Styx Grid Service.

getSGSConfigInfo() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

getSGSInstance() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.InstanceTerminatorTrigger

Gets the SGS instance that is associated with this Trigger

getSize() - Method in class uk.ac.rdg.resc.jstyx.infernogrid.Sexpression

getSize() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

Gets the total size of the DirEntry, including the two-byte size field at the start of the stat entry.

getSSLContext() - Method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

getSteerableParameterNames() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

getSteerables() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

getStreamReader(CStyxFile) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Gets a CachedStreamReader that can be used to read from the given stream This is not used in the current implementation of SGS but might be in the future, perhaps to support GUI applications

getString() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getSystemDisplayName(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Always returns the name of the file (not the full path)

getTableCellEditorComponent(JTable, Object, boolean, int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellEditor

getTableCellRendererComponent(JTable, Object, boolean, boolean, int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellRenderer

getTag() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getText() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.StatusCode

getToken(int) - Method in class uk.ac.rdg.resc.jstyx.infernogrid.Sexpression

getType() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSInput

getType() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSOutput

getType() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

Gets the type of this parameter: TypeMeaning STRINGPlain string INPUT_FILEFile that the executable will read: must be uploaded OUTPUT_FILEFile that the executable will write: can be downloaded

getType() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

getType() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

getType() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

getUByte() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getUInt() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getULong() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getUname() - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

getUName() - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

getURL() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

getURL() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

getURL() - Method in class uk.ac.rdg.resc.jstyx.server.URLFile

getUser() - Method in class uk.ac.rdg.resc.jstyx.server.AuthFile

getUser(String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

getUsername() - Method in class uk.ac.rdg.resc.jstyx.server.User

getUseSSL() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

getUShort() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

getValueAt(Object, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

getValueAt(Object, int) - Method in interface uk.ac.rdg.resc.jstyx.client.browser.TreeTableModel

Returns the value to be displayed for node node, at column number column.

getValueAt(int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

getVersion() - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

getVersion() - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

getVersion() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

getVersion() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

getWorkingDirectory() - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

gotArguments(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when we have a new string of command line arguments (for debug purposes)

gotArguments(String) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when we have a new string of command line arguments (for debug purposes)

gotArguments(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when we have a new set of command line arguments

gotExitCode(int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when the exit code from the service is received: this signals that the remote executable has completed.

gotExitCode(int) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when the exit code from the service is received: this signals that the remote executable has completed.

gotExitCode(int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when the exit code from the service is received: this signals that the remote executable has completed.

gotExitCode(int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Called when the exit code from the service is received: this signals that the remote executable has completed.

gotInstances(CStyxFile[]) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSChangeListener

Fired when we have got the latest list of instances for this SGS.

gotParameterValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when we have a new value for a parameter

gotParameterValue(String, String) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when we have a new value for a parameter

gotParameterValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when we have a new value for a parameter

gotServiceDataValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when the given service data element changes

gotServiceDataValue(String, String) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when the given service data element changes

gotServiceDataValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when the value of a service data element changes

gotServiceDataValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Called when the given service data element changes

gotSteerableParameterValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when we have a new value for a steerable parameter

gotSteerableParameterValue(String, String) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when we have a new value for a steerable parameter

gotSteerableParameterValue(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when we have a new value for a steerable parameter

gridServices - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

H

Handler - Class in uk.ac.rdg.resc.jstyx.client.protocol.styx

Handler for StyxURLConnections

Handler() - Constructor for class uk.ac.rdg.resc.jstyx.client.protocol.styx.Handler

Creates a new instance of Handler

hasFid() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

HEADER_LENGTH - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

The header length of a StyxMessage

HelloWorld - Class in uk.ac.rdg.resc.jstyx.gridservice.tutorial

Simple "Hello world" program

HelloWorld() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.tutorial.HelloWorld

host - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

I

incrementVersion() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Increments the file's version number and ensures that the version number never exceeds the maximum value of an unsigned 4-byte integer (it wraps back to zero if the version number gets this large)

InMemoryFile - Class in uk.ac.rdg.resc.jstyx.server

File whose underlying data are stored as a ByteBuffer in memory.

InMemoryFile(String, String, String, int, boolean, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.InMemoryFile

Creates a new instance of InMemoryFile

InMemoryFile(String, int, boolean, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.InMemoryFile

InMemoryFile(String, int) - Constructor for class uk.ac.rdg.resc.jstyx.server.InMemoryFile

InMemoryFile(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.InMemoryFile

Creates an InMemoryFile with default permissions (0666, rw-rw-rw-)

INPUT_FILE - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

inputFilesUploaded() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when the input files have been successfully uploaded

inputFilesUploaded() - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when the input files have been successfully uploaded

inputFilesUploaded() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when the input files have been successfully uploaded.

instance - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

InstanceTerminatorJob - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Job that is fired when the Quartz scheduler (garbage-collector) signals that an SGS instance is to be deleted.

InstanceTerminatorJob() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.InstanceTerminatorJob

InstanceTerminatorTrigger - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Job that is fired by the Quartz scheduler in order to automatically destroy a Styx Grid Service instance (i.e.

InstanceTerminatorTrigger(StyxGridServiceInstance, String, Date) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.InstanceTerminatorTrigger

Creates a new instance of InstanceTerminator.

InterloperClient - Class in uk.ac.rdg.resc.jstyx.interloper

The client-side part of an Interloper

InterloperClient(InetSocketAddress, ProtocolSession, InterloperListener) - Constructor for class uk.ac.rdg.resc.jstyx.interloper.InterloperClient

Creates a new instance of InterloperClient

InterloperListener - Interface in uk.ac.rdg.resc.jstyx.interloper

Interface defining methods that are fired when a StyxInterloper (or the StyxMon) receive and send messages

INTERNAL_SGS_ERROR - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

The exit code that signals an internal error in the SGS mechanism, rather than an error code from the executable that is running on the SGS server

InvalidPathException - Exception in uk.ac.rdg.resc.jstyx.client

Exception that is thrown by StyxConnection.getCanonicalPath() when presented with an invalid path.

InvalidPathException(String) - Constructor for exception uk.ac.rdg.resc.jstyx.client.InvalidPathException

Creates a new instance of IllegalPathException

is - Variable in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

isAbsolute() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

isAppendOnly() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

isAuth() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

isAuth() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

isAuth() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

isAuthenticated(String) - Method in class uk.ac.rdg.resc.jstyx.server.AuthFile

isCellEditable(EventObject) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

isCellEditable(Object, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

By default, make the column with the Tree in it the only editable one.

isCellEditable(Object, int) - Method in interface uk.ac.rdg.resc.jstyx.client.browser.TreeTableModel

Indicates whether the the value for node node, at column number column is editable.

isCellEditable(int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

isComputerNode(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

isDirectory() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

isDirectory() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Tests whether this FileWrapper wraps a directory

isDirectory() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

isDirectory() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

isDrive(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

isEOF() - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

isExclusive() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

isFile() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Tests whether this FileWrapper wraps a normal file (i.e.

isFileSystem(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Always returns false (all files are "real" files)

isFileSystemRoot(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

isFloppyDrive(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

isHiddenFile(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Always returns false

isLeaf(Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

isLeaf(Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

isMember(String, String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

isMemberOf(String) - Method in class uk.ac.rdg.resc.jstyx.server.User

isOpen() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

isParent(File, File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

isRoot(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

isRoot() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

isSameFile(CStyxFile) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Returns true if this CStyxFile represents the same file on the server as the CStyxFile passed in the argument.

isTraversable(File) - Method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

J

JonSSLContextFactory - Class in uk.ac.rdg.resc.jstyx.ssl

Factory to create a bougus SSLContext.

JonSSLContextFactory() - Constructor for class uk.ac.rdg.resc.jstyx.ssl.JonSSLContextFactory

JTreeTable - Class in uk.ac.rdg.resc.jstyx.client.browser

This example shows how to create a simple JTreeTable component, by using a JTree as a renderer (and editor) for the cells in a particular column in the JTable.

JTreeTable(TreeTableModel) - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable

JTreeTable.TreeTableCellEditor - Class in uk.ac.rdg.resc.jstyx.client.browser

JTreeTable.TreeTableCellEditor() - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellEditor

JTreeTable.TreeTableCellRenderer - Class in uk.ac.rdg.resc.jstyx.client.browser

JTreeTable.TreeTableCellRenderer(TreeModel) - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellRenderer

K

keystore - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

L

lastModified() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

lastModifiedTime - Variable in class uk.ac.rdg.resc.jstyx.server.StyxFile

length() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

length - Variable in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

list() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

list(FilenameFilter) - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Returns an array of abstract pathnames denoting the files and directories in the directory denoted by this abstract pathname that satisfy the specified filter.

listenerList - Variable in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

listenerList - Variable in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

listFiles() - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Returns an array of FileWrappers denoting the files in this directory.

listFiles(FilenameFilter) - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Returns an array of abstract pathnames denoting the files and directories in the directory denoted by this abstract pathname that satisfy the specified filter.

listFiles(FileFilter) - Method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Returns an array of abstract pathnames denoting the files and directories in the directory denoted by this abstract pathname that satisfy the specified filter.

listRoots() - Static method in class uk.ac.rdg.resc.jstyx.client.FileWrapper

Lists available filesystem roots.

lock - Static variable in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

M

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.client.Benchmark

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.client.browser.StyxBrowser

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Test function for StyxFileSystemView

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.client.StyxGet

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.client.TestClient

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorer

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.server.StyxGridService

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.tutorial.HelloWorld

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.tutorial.Replace

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.gridservice.tutorial.Reverse

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.infernogrid.SexpParser

Test function that reads the list of nodes from an Inferno Grid installation

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.interloper.StyxMon

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Simple test function

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Simple test program

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

Simple test routine

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.server.StyxServer

Simple test Styx server that exposes the contents of a local directory.

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Simple test routine for the date parsing routines

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.tutorial.ReadingAndWriting

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.tutorial.SimpleClient

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.tutorial.SimpleServer

main(String[]) - Static method in class uk.ac.rdg.resc.jstyx.tutorial.WhoAmIFile

Simple test function: sets up a StyxServer that serves up a WhoAmIFile

MAX_MESSAGE_SIZE - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

The maximum length of a single Styx message.

MAXPATHELEMENTS - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

MAXUBYTE - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

MAXUINT - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

MAXULONG - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

MAXUSHORT - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

merge(int, int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

MergeSort - Class in uk.ac.rdg.resc.jstyx.client.browser

An implementation of MergeSort, needs to be subclassed to provide a comparator.

MergeSort() - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

mergeSort(int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

MessageCallback - Class in uk.ac.rdg.resc.jstyx.client

Callback class that is associated with an outgoing Tmessage.

MessageCallback() - Constructor for class uk.ac.rdg.resc.jstyx.client.MessageCallback

messageReceived(ProtocolSession, Object) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Called when a reply has arrived from a Styx server

messageReceived(ProtocolSession, Object) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

messageSent(ProtocolSession, Object) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Called by MINA when a message has been sent

messageSent(ProtocolSession, Object) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

MonitoredFileOnDisk - Class in uk.ac.rdg.resc.jstyx.server

A file on disk that is continuously monitored.

MonitoredFileOnDisk(String, long) - Constructor for class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Creates a new instance of MonitoredFileOnDisk.

MonitoredFileOnDisk(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Creates a new instance of MonitoredFileOnDisk that monitors the underlying file every 2 seconds.

MonitoredFileOnDisk(String, File, long) - Constructor for class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Creates a new instance of MonitoredFileOnDisk.

MonitoredFileOnDisk(File, long) - Constructor for class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Creates a new instance of MonitoredFileOnDisk.

MonitoredFileOnDisk(File) - Constructor for class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Creates a new instance of MonitoredFileOnDisk that monitors the underlying file every 2 seconds.

mustExist - Variable in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

N

name - Variable in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

name - Variable in class uk.ac.rdg.resc.jstyx.server.StyxFile

newData(GeneralCachingStreamReader.DataRequest, byte[], int, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.CachedStreamReader

newData(byte[], int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Called by CachedStreamReader when a chunk of data is read from stream

newData(GeneralCachingStreamReader.DataRequest, byte[], int, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

newDataArrived(byte[], int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Called when new data arrive from the server

newDataArrived(byte[], int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.TextStreamViewer

Called when new data arrive from the server.

NEWLINE - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.CreateCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.DownloadCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.GetChildrenCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.OpenCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.OpenOrCreateCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.ReadCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.RefreshCallback

nextStage(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.UploadCallback

nextStage() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.WriteCallback

nodeForRow(int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

NOFID - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

NOTAG - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

now() - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

O

OEXEC - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

offset - Variable in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

offset - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader.DataRequest

open(int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Opens the file on the server, i.e.

openAsync(int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Opens the file on the server.

openAsync(int, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Opens the file on the server.

OpenCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback used when opening a file (see CStyxFile.openAsync())

OpenCallback(CStyxFile, int, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.OpenCallback

openConnection(URL) - Method in class uk.ac.rdg.resc.jstyx.client.protocol.styx.Handler

openFile(String, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets a file on the same connection as this CStyxFile, then opens it.

openFile(String, int) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Opens a file on the server, throwing a StyxException if the file can't be found or opened in the given mode.

openOrCreate(boolean, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Opens or creates this file: if the file exists it will be opened with the given mode.

openOrCreateAsync(boolean, int, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Opens or creates this file: if the file exists it will be opened with the given mode.

OpenOrCreateCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback used by CStyxFile.openOrCreateAsync()

OpenOrCreateCallback(CStyxFile, boolean, int, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.OpenOrCreateCallback

ORCLOSE - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

ORDWR - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

OREAD - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

OTRUNC - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

OUTPUT_FILE - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

OWRITE - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

P

paint(Graphics) - Method in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellRenderer

ParametersPanel - Class in uk.ac.rdg.resc.jstyx.gridservice.client

ParametersPanel() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.ParametersPanel

Creates new form ParametersPanel

parent - Variable in class uk.ac.rdg.resc.jstyx.server.StyxFile

parseXsdDateTime(String) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Parses a String that is formatted according to the xsd:dateTime data type and returns it as a Date

passwordMatches(String) - Method in class uk.ac.rdg.resc.jstyx.server.User

port - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

port - Variable in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

processAndReplyRead(String, StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method for processing a read request and replying appropriately to the client, based on the contents of the file.

processAndReplyRead(byte[], StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method for processing a read request and replying appropriately to the client, based on the contents of the file.

processAndReplyRead(ByteBuffer, StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method for processing a read request and replying appropriately to the client, based on the contents of the file.

PropertiesPanel - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Panel for displaying properties of an SGS server, service or instance

PropertiesPanel() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.PropertiesPanel

Creates a new instance of PropertiesPanel

put(byte[]) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

put(byte[], int, int) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

putData(ByteBuffer, long) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts a chunk of data to the buffer.

putData(ByteBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts a chunk of data to the buffer.

putDirEntry(DirEntry) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts the given DirEntry to the buffer at the current position

putQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

putQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts the given Qid to the buffer at the current position

putString(String) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts a string into the buffer at the current position.

putUByte(int) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts an unsigned byte into the buffer at the current position

putUInt(long) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts an unsigned int (4 bytes) into the buffer at the current position

putUInt(int, long) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts an unsigned int (4 bytes) into the buffer at the given position

putULong(ULong) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts the given ULong to the buffer at the current position

putUShort(int) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts an unsigned short (2 bytes) into the buffer at the current position

putUShort(int, int) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Puts an unsigned short (2 bytes) into the buffer at the given position

Q

Qid - Class in uk.ac.rdg.resc.jstyx.types

A 13-byte type representing the server's view of a file

Qid(int, long, ULong) - Constructor for class uk.ac.rdg.resc.jstyx.types.Qid

Qid(int, long, long) - Constructor for class uk.ac.rdg.resc.jstyx.types.Qid

R

RattachMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TattachMessage

RattachMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RattachMessage

Creates a new RversionMessage

RattachMessage(Qid) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RattachMessage

RauthMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TopenMessage

RauthMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RauthMessage

Creates a new RversionMessage

RauthMessage(Qid) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RauthMessage

RclunkMessage - Class in uk.ac.rdg.resc.jstyx.messages

Response to a TclunkMessage to forget about a fid

RclunkMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RclunkMessage

Creates a new RclunkMessage

RclunkMessage() - Constructor for class uk.ac.rdg.resc.jstyx.messages.RclunkMessage

RcreateMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TcreateMessage

RcreateMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

Creates a new RcreateMessage

RcreateMessage(Qid, long) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

read(long) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads a chunk of data from the file.

read() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStream

read(byte[], int, int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileInputStream

read(StreamViewer, long, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.CachedStreamReader

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.ExitCodeFile

read(GeneralCachingStreamReader.DataRequest) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

Get data from the stream's cache.

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSOutputFile

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Reads from the underlying java.io.File.

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Returns the directory contents.

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Reads data from this file.

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.URLFile

read(StyxFileClient, long, int, int) - Method in class uk.ac.rdg.resc.jstyx.tutorial.WhoAmIFile

Reads data from this file.

readAllParameterValuesAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends messages to get the current value of all parameters.

readAllServiceDataValuesAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends messages to get the current value of all pieces of service data.

readAllSteerableParameterValuesAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends messages to get the current value of all steerable parameters.

readAsync(long) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads a chunk of data from the file.

readAsync(long, boolean) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads a chunk of data from the file.

readAsync(long, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads a chunk of data from the file.

readAsync(long, int, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads a chunk of data from the file.

readAsync(long, int, boolean, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Reads a chunk of data from the file.

readBytesFrom(ByteBuffer) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Read bytes from the given ByteBuffer into this Message.

ReadCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback used when reading from a file (see CStyxFile.readAsync())

ReadCallback(CStyxFile, long, int, boolean, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.ReadCallback

reader - Variable in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

readError(Exception) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

ReadingAndWriting - Class in uk.ac.rdg.resc.jstyx.tutorial

Accompanies the ReadingAndWriting section of the tutorial.

ReadingAndWriting() - Constructor for class uk.ac.rdg.resc.jstyx.tutorial.ReadingAndWriting

readOutputFiles() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Starts reading from the output files.

readServiceDataValueAsync(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends a message to get the current value of the given piece of service data.

receivedEOF() - Method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

redirectOutput(String, PrintStream) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Starts reading data from the given output file and redirects the data to the given PrintStream.

redirectOutput(String, File) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Starts reading data from the given output file and redirects the data to the given local File.

refresh() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Refreshes the stat (DirEntry) of the file.

refresh(boolean) - Method in class uk.ac.rdg.resc.jstyx.server.DirectoryOnDisk

Reads all metadata from underlying disk file

refresh() - Method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Reads all metadata from underlying disk file

refresh() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Refreshes this file (if it represents another entity, such as a file on disk, this method is used to make sure that the file metadata (length, access time etc) are up to date.

refresh(boolean) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

refresh() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Refreshes this file (if it represents another entity, such as a file on disk, this method is used to make sure that the file metadata (length, access time etc) are up to date.

refreshAsync() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Refreshes the status of the file by sending a TStatMessage.

refreshAsync(MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Refreshes the status of the file by sending a TstatMessage.

RefreshCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Description of RefreshCallback goes here.

RefreshCallback(CStyxFile, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.RefreshCallback

release() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessageDecoder

Releases the resources associated with this Decoder (specifically, releases the ByteBuffer that was allocated for reading message headers.

remaining() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

remove() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Removes this directory from the server.

remove() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Removes this file from the Styx server

removeAllChildren() - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Recursively removes all children from this directory.

removeCellEditorListener(CellEditorListener) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

removeChangeListener(CStyxFileChangeListener) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Removes the given change listener

removeChangeListener(SGSChangeListener) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Removes a SGSChangeListener to the list of registered change listeners.

removeChangeListener(SGSInstanceClientChangeListener) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Removes a SGSInstanceChangeListener.

removeChangeListener(StyxFileChangeListener) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Removes a change listener.

removeChild(StyxFile) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Removes the given file from this directory.

removeClient(StyxFileClient) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Removes the client that is connected on the given session.

removeListener(StyxConnectionListener) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Removes the given listener; does nothing if the listener has not been registered with this.addListener().

removeTreeModelListener(TreeModelListener) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

rename(String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Renames this file to the given name.

Replace - Class in uk.ac.rdg.resc.jstyx.gridservice.tutorial

Program that searches through an input file and replaces all instances of a given string with another string.

Replace() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.tutorial.Replace

reply(ProtocolSession, StyxMessage, int) - Static method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

Convenience method for sending a message back to the client.

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.CreateCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.DownloadCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.GetChildrenCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.GetFidCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.OpenCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.OpenOrCreateCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.ReadCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.RefreshCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.UploadCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.WriteCallback

replyArrived(StyxMessage, StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.MessageCallback

Called when the reply arrives.

replyRead(StyxFileClient, byte[], int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method to reply to a Read message.

replyRead(StyxFileClient, ByteBuffer, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method to reply to a Read message.

replyRead(StyxFileClient, ByteBuffer, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method to reply to a Read message.

replyRead(StyxFileClient, byte[], int, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method to reply to a Read message.

replyRead(StyxFileClient, RreadMessage) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method to reply to a Read message.

replyWrite(StyxFileClient, int, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Method to reply to a Write message.

RerrorMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server if an error occurred

RerrorMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

Creates a new RversionMessage

RerrorMessage(String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

reset() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Resets the stream to the start, so we can start reading from the beginning again.

returnFid(long) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Returns the given fid back to the pool

Reverse - Class in uk.ac.rdg.resc.jstyx.gridservice.tutorial

Simple program that reads input one line at a time from standard input, reverses the characters in each line, then prints the reversed line to the standard output

Reverse() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.tutorial.Reverse

RflushMessage - Class in uk.ac.rdg.resc.jstyx.messages

Response to a TflushMessage to abort a message

RflushMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RflushMessage

Creates a new RclunkMessage

RflushMessage() - Constructor for class uk.ac.rdg.resc.jstyx.messages.RflushMessage

rMessageSent(StyxMessage) - Method in interface uk.ac.rdg.resc.jstyx.interloper.InterloperListener

Called when an Rmessage has been sent back to the client

rMessageSent(StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

Called when an Rmessage has been sent back to the client.

rMessageSent(StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxMon

Required by the InterloperListener interface.

root - Variable in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

RopenMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TopenMessage

RopenMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RopenMessage

Creates a new RversionMessage

RopenMessage(Qid, long) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RopenMessage

RreadMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TreadMessage

RreadMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RreadMessage

Creates a new RversionMessage

RreadMessage(byte[]) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RreadMessage

Creates an RreadMessage from the given byte array

RreadMessage(byte[], int, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RreadMessage

Creates an RreadMessage from the given byte array.

RreadMessage(ByteBuffer) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RreadMessage

Creates an RreadMessage from the given org.apache.mina.common.ByteBuffer.

RremoveMessage - Class in uk.ac.rdg.resc.jstyx.messages

Response to a TremoveMessage to delete a file

RremoveMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RremoveMessage

Creates a new RremoveMessage

RremoveMessage() - Constructor for class uk.ac.rdg.resc.jstyx.messages.RremoveMessage

RstatMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TstatMessage

RstatMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RstatMessage

Creates a new RversionMessage

RstatMessage(DirEntry) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RstatMessage

run() - Method in class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

RUNNING - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.server.StatusCode

RversionMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TversionMessage

RversionMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RversionMessage

Creates a new RversionMessage

RversionMessage(long, String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RversionMessage

RwalkMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message returned by the server in response to a TwalkMessage

RwalkMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

Creates a new RwalkMessage

RwalkMessage(Qid[]) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

RwriteMessage - Class in uk.ac.rdg.resc.jstyx.messages

Response to a TwriteMessage to write data to a file

RwriteMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

Creates a new RwriteMessage

RwriteMessage(int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

RwstatMessage - Class in uk.ac.rdg.resc.jstyx.messages

Response to a TwstatMessage to change a file's attributes

RwstatMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.RwstatMessage

Creates a new RwstatMessage

RwstatMessage() - Constructor for class uk.ac.rdg.resc.jstyx.messages.RwstatMessage

S

scheduleTermination(StyxGridServiceInstance, Date) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.StyxGridService

Schedules the termination of the given SGS instance at the given time.

SDEConfig - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Simple class containing details of a service data element

SDEConfig(Node) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.SDEConfig

Creates an SDEConfig object from the given Node in the XML document.

send(StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Sends a message and blocks until the corresponding reply arrives

send(Object) - Method in class uk.ac.rdg.resc.jstyx.interloper.InterloperClient

sendAsync(StyxMessage, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Sends a message and returns its tag.

sendAsync(StyxMessage, MessageCallback, boolean) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Sends a message and returns its tag.

SERVER_MODE - Static variable in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloperProtocolProvider

serviceAborted() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when the service is stopped before it has finished

serviceAborted() - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when the service is stopped before it has finished

serviceAborted() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when the service is stopped before it has finished

serviceStarted() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

Called when the service is started

serviceStarted() - Method in interface uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeListener

Called when the service is started

serviceStarted() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceGUI

Called when the service is started

sessionClosed(ProtocolSession) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Called when the connection is closed

sessionClosed(ProtocolSession) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

sessionCreated(ProtocolSession) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Invoked when the session is created.

sessionCreated(ProtocolSession) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

Invoked when the session is created.

sessionIdle(ProtocolSession, IdleStatus) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Required by the ProtocolHandler interface.

sessionIdle(ProtocolSession, IdleStatus) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

sessionOpened(ProtocolSession) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Called when the socket connection to the remote server has been established

sessionOpened(ProtocolSession) - Method in class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

setAndGetContents(CStyxFile) - Static method in class uk.ac.rdg.resc.jstyx.tutorial.ReadingAndWriting

setAQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.messages.RauthMessage

setBounds(int, int, int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellRenderer

setCacheFile(File) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

setChildren(CStyxFile[]) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Sets the children of this file.

setContents(String) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Sets the contents of the file to the given string.

setContents(String) - Method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

Set the contents of this file to the given String.

setCount(int) - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

setDev(long) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setDirEntry(DirEntry) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Sets the dirEntry of this file.

setExitCode(int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.ExitCodeFile

Sets the exit code.

setFid(long) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Sets the fid of the file.

setFid(long) - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

setFid(long) - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

setFid(long) - Method in class uk.ac.rdg.resc.jstyx.messages.TstatMessage

Sets the fid for this TstatMessage

setFid(long) - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

setFileLength(ULong) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setFileName(String) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setGroup(String) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setInputFile(SGSInput) - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

Sets the input file that is linked to this parameter

setInputSource(SGSInput, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sets the file or URL from which an input file will get its data.

setInputSource(SGSInput, File) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sets the local file from which an input file will get its data.

setInputSources() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Sets the input sources for the Styx Grid Service

setIoUnit(int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Sets the maximum number of bytes that can be read from or written to this file in a single operation.

setIoUnit(long) - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

setIoUnit(long) - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

setLastAccessTime(long) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

setLastAccessTime(long) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setLastModified(long, User) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Sets the last modified time of the file.

setLastModifiedBy(String) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setLastModifiedTime(long) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setLength(ULong) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Sets the length of the file.

setLifetime(double) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Set the lifetime of this SGS instance.

setMaxMessageSize(int) - Method in class uk.ac.rdg.resc.jstyx.client.StyxConnection

Sets the maximum size of message that can be sent on this connection

setMaxMessageSize(long) - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

setMaxMessageSize(long) - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

setMessage(String) - Method in class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

setMinReplyInterval(float) - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

Sets a minimum reply interval, i.e.

setMode(int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Set the mode of this file: this should not normally be called, except by the OpenCallback, when the file has been open

setMode(int) - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

setMode(long) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Sets the mode of the file (permissions plus other flags).

setMode(long) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setName(String) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Changes the name of the file.

setNewFid(long) - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

setNextFileToRead(int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

setOffset(ULong) - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

setOffset(long) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

setOutputFile(SGSOutput) - Method in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

Sets the output file that is linked to this parameter

setOutputStream(OutputStream) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.StdinFile

setOwner(String) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setParameters() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Sets the values of all the parameters

setParameterValue(SGSParam, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sets the value of the parameter with the given name to the given value.

setParameterValue(SGSParam, String[]) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sets the value of the parameter with the given name to the given value.

setParameterValue(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

Sets the parameter value, checking that the value is OK.

setParameterValueAsync(SGSParam, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sets the value of the parameter with the given name to the given value.

setPath(String) - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

setPermissions(int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Sets the permissions of the file

setPosition(long) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Sets the position of the stream to the given offset (i.e.

setQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Sets the qid of the file.

setQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

setQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

setQid(Qid) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setReadOnly() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Makes the file read-only (e.g.

setRequestHeader(String, String) - Method in class uk.ac.rdg.resc.jstyx.client.protocol.styx.StyxURLConnection

This is empty because we don't need to set any header information to find a resource on a Styx server

setRoot(Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

setStatusBarText(String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorer

Sets the status bar text to the given string

setSteerableParameterValueAsync(String, String) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sets the value of the steerable parameter with the given name to the given value.

setStreamReader(CachedStreamReader) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Sets the CStyxFile that represents the stream

setTag(int) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Sets the tag of the message

setType(int) - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

setURL(URL) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

setURL(URL) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.StdinFile

setValue(long) - Method in class uk.ac.rdg.resc.jstyx.types.ULong

setValueAt(Object, Object, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

setValueAt(Object, Object, int) - Method in interface uk.ac.rdg.resc.jstyx.client.browser.TreeTableModel

Sets the value for node node, at column number column.

setValueAt(Object, int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

setVersion(String) - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

setVersion(String) - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

SexpParseException - Exception in uk.ac.rdg.resc.jstyx.infernogrid

Exception that is thrown when an error occurs when parsing an Sexpression

SexpParseException(String) - Constructor for exception uk.ac.rdg.resc.jstyx.infernogrid.SexpParseException

Creates a new instance of SexpParseException

SexpParser - Class in uk.ac.rdg.resc.jstyx.infernogrid

Class for parsing an InputStream into sets of S-expressions.

SexpParser(InputStream) - Constructor for class uk.ac.rdg.resc.jstyx.infernogrid.SexpParser

Creates a new instance of SexpParser

SexpParser(InputStreamReader) - Constructor for class uk.ac.rdg.resc.jstyx.infernogrid.SexpParser

Creates a new instance of SexpParser

Sexpression - Class in uk.ac.rdg.resc.jstyx.infernogrid

Simple representation of an S-expression.

Sexpression() - Constructor for class uk.ac.rdg.resc.jstyx.infernogrid.Sexpression

Creates a new instance of Sexpression

SGSChangeListener - Interface in uk.ac.rdg.resc.jstyx.gridservice.client

Change listener that defines methods that are called when changes to a Styx Grid Service occur

SGSClient - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Client for a Styx Grid Service.

SGSClient(CStyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSClient

Creates a new instance of SGSClient.

SGSConfig - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Class containing configuration info for a single Styx Grid Service

SGSConfig(Node, SGSServerConfig) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

This is called by the SGS server program to generate a configuration object from the XML config file.

SGSConfig(String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfig

This constructor is called by client programs to create an SGSConfig object from an XML snippet that has been read over the Styx interface.

SGSConfigException - Exception in uk.ac.rdg.resc.jstyx.gridservice.config

Exception that is thrown when an error occurs when reading the SGS config file

SGSConfigException(String) - Constructor for exception uk.ac.rdg.resc.jstyx.gridservice.config.SGSConfigException

Creates a new instance of SGSConfigException

SGSExplorer - Class in uk.ac.rdg.resc.jstyx.gridservice.client

GUI application for browsing and using Styx Grid Services

SGSExplorer() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorer

Creates a new instance of SGSExplorer

SGSExplorerTreeModel - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Data model for tree view of SGS servers and services in the SGSExplorer.

SGSExplorerTreeModel() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorerTreeModel

Creates a new instance of SGSExplorerTreeModel

SGSInput - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Class containing information about the input file and streams required by the service

SGSInput(String, String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.SGSInput

SGSInputFile - Class in uk.ac.rdg.resc.jstyx.gridservice.server

A file that is used to provide input (as a file or as stdin stream) to a Styx Grid Service.

SGSInputFile.File - Class in uk.ac.rdg.resc.jstyx.gridservice.server

SGSInputFile.File(File, StyxGridServiceInstance) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.File

SGSInputFile.StdinFile - Class in uk.ac.rdg.resc.jstyx.gridservice.server

file through which clients can write to the process's input stream directly

SGSInputFile.StdinFile(StyxGridServiceInstance) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.StdinFile

Creates new StdinFile - will be called "stdin"

SGSInstanceChangeListener - Interface in uk.ac.rdg.resc.jstyx.gridservice.server

Defines methods that are called when events happen to a particular StyxGridServiceInstance

SGSInstanceClient - Class in uk.ac.rdg.resc.jstyx.gridservice.client

A client for a Styx Grid Service Instance.

SGSInstanceClient(SGSClient, CStyxFile) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Creates a new SGSInstanceClient for an instance that has its root in the given CStyxFile.

SGSInstanceClient(String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Gets an SGSInstanceClient, given the full URL to the root of the new instance, e.g.

SGSInstanceClientChangeAdapter - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Convenience class that provides blank implementations for all files in the SGSInstanceChangeListener

SGSInstanceClientChangeAdapter() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClientChangeAdapter

SGSInstanceClientChangeListener - Interface in uk.ac.rdg.resc.jstyx.gridservice.client

Interface defining methods that will be fired when an SGSClient receives notification of a change in state of an SGS instance or when new data arrive.

SGSInstanceGUI - Class in uk.ac.rdg.resc.jstyx.gridservice.client

GUI for interacting with an SGS instance.

SGSOutput - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Class containing information about an output file or stream that is exposed by the SGS.

SGSOutput(String, String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.SGSOutput

SGSOutputFile - Class in uk.ac.rdg.resc.jstyx.gridservice.server

A file that can be read to obtain data from a file that is put out by an executable in a Styx Grid Service

SGSOutputFile(File, StyxGridServiceInstance) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.SGSOutputFile

Creates a new instance of SGSOutputFile

SGSParam - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Class containing information about the command-line parameters expected by the Styx Grid Service

SGSParamFile - Class in uk.ac.rdg.resc.jstyx.gridservice.server

A StyxFile interface to a parameter that is passed to an SGS instance as part of the command line of the underlying executable.

SGSParamFile(SGSParam, StyxGridServiceInstance) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

SGSRun - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Simple program that logs on to an SGS server, creates a new service instance, runs it and redirects the output streams to the console and local files

SGSRun(String, int, String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Creates a new SGSRun object

SGSServerClient - Class in uk.ac.rdg.resc.jstyx.gridservice.client

A client of an SGS server.

SGSServerConfig - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Configuration of a Styx Grid Service server

SGSServerConfig(String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

Creates a new server configuration from the given XML document

shouldSelectCell(EventObject) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

showContext(FileNode, Component, int, int) - Method in class uk.ac.rdg.resc.jstyx.client.browser.StyxBrowserPopupMenu

Shows the context menu for the particular CStyxFile that is passed in

showContext(String, Component, int, int) - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxMonPopupMenu

Shows a popup menu that gives the user the option to filter by a given filename

SimpleClient - Class in uk.ac.rdg.resc.jstyx.tutorial

A client program that interacts with the SimpleServer.

SimpleClient() - Constructor for class uk.ac.rdg.resc.jstyx.tutorial.SimpleClient

SimpleServer - Class in uk.ac.rdg.resc.jstyx.tutorial

Program that runs a very simple Styx server that serves up a single InMemoryFile.

SimpleServer() - Constructor for class uk.ac.rdg.resc.jstyx.tutorial.SimpleServer

sort(Object[]) - Method in class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

start() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.CachedStreamReader

Starts reading from the stream.

start() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSRun

Starts the service and begins reading from the output streams

start() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Sends a message to start reading from the stream and makes the GUI visible.

start() - Method in class uk.ac.rdg.resc.jstyx.interloper.InterloperClient

Starts the InterloperClient

start() - Method in class uk.ac.rdg.resc.jstyx.server.StyxServer

Starts the Styx server.

started - Variable in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

startMonitoring() - Method in class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Starts monitoring the file

startReading(InputStream) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.GeneralCachingStreamReader

Sets the input stream from which the CachingStreamReader gets data and immediately starts reading from this stream

startService() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Starts the service.

startServiceAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends a message to start the service.

statChanged(CStyxFile, DirEntry) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called after the stat of a file (permissions etc) has been changed.

statChanged(CStyxFile, DirEntry) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called after the stat of a file (permissions etc) has been changed.

statChanged(CStyxFile, DirEntry) - Method in class uk.ac.rdg.resc.jstyx.client.TestClient

statusChanged(StatusCode) - Method in interface uk.ac.rdg.resc.jstyx.gridservice.server.SGSInstanceChangeListener

Called when the status of the service has changed

statusChanged(StatusCode) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSOutputFile

Called automatically when the status of the Styx Grid Service instance changes.

StatusCode - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Type-safe enumeration of possible status codes for a Styx Grid Service instance.

Steerable - Class in uk.ac.rdg.resc.jstyx.gridservice.config

Simple class representing a steerable parameter, i.e.

Steerable(Node) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.config.Steerable

stop() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

Sends a message to stop reading from this stream.

stop() - Method in class uk.ac.rdg.resc.jstyx.interloper.InterloperClient

stopCellEditing() - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractCellEditor

stopMonitoring() - Method in class uk.ac.rdg.resc.jstyx.server.MonitoredFileOnDisk

Stops monitoring the file

stopService() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Stops the service.

stopServiceAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Sends a message to stop the service.

STREAM - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSInput

STREAM - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSOutput

StreamViewer - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Class representing a viewer for an output stream from a Styx Grid Service instance.

StreamViewer() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.StreamViewer

STRING - Static variable in class uk.ac.rdg.resc.jstyx.gridservice.config.SGSParam

StringServiceDataElement - Class in uk.ac.rdg.resc.jstyx.gridservice.server

A ServiceDataElement represented as a String

StringServiceDataElement(String, boolean, String, float) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

Creates a new instance of StringServiceDataElement

StringServiceDataElement(String, boolean, String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

StringServiceDataElement(String, String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

StringServiceDataElement(String, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

StringServiceDataElement(String) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.StringServiceDataElement

strToUTF8(String) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Converts a string to a byte array in UTF-8

StyxBrowser - Class in uk.ac.rdg.resc.jstyx.client.browser

Main class for a graphical StyxBrowser; simply puts a JTreeTable in a JFrame

StyxBrowser(String, int, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.StyxBrowser

StyxBrowserPopupMenu - Class in uk.ac.rdg.resc.jstyx.client.browser

Pop-up menu that is displayed when a user requests a pop-up on one of the files in the hierarchy.

StyxBrowserPopupMenu() - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.StyxBrowserPopupMenu

Creates a new instance of StyxBrowserPopUpMenu

StyxBuffer - Class in uk.ac.rdg.resc.jstyx.messages

Wrapper class for a ByteBuffer that allows Styx primitives to be easily read from and written to the buffer.

StyxBuffer(ByteBuffer) - Constructor for class uk.ac.rdg.resc.jstyx.messages.StyxBuffer

Creates a new instance of StyxBuffer

StyxClientProtocolProvider - Class in uk.ac.rdg.resc.jstyx.client

Protocol provider for Styx client (i.e.

StyxClientProtocolProvider(StyxConnection) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxClientProtocolProvider

StyxCodecFactory - Class in uk.ac.rdg.resc.jstyx.messages

Codec Factory for the Styx protocol.

StyxCodecFactory() - Constructor for class uk.ac.rdg.resc.jstyx.messages.StyxCodecFactory

StyxConnection - Class in uk.ac.rdg.resc.jstyx.client

Object representing a client connection to a Styx server.

StyxConnection(String, int, String, String, int) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxConnection

Creates a new instance of StyxConnection.

StyxConnection(String, int, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxConnection

Uses DEFAULT_MAX_MESSAGE_SIZE_REQUEST

StyxConnection(String, int, int) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxConnection

Creates a new instance of StyxConnection, connecting as an anonymous user

StyxConnection(String, int) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxConnection

Creates a new instance of StyxConnection, connecting as an anonymous user

StyxConnectionListener - Interface in uk.ac.rdg.resc.jstyx.client

Interface defining events that are fired when a StyxConnection has been successfully opened or closed, or when an error occurs

StyxDirectory - Class in uk.ac.rdg.resc.jstyx.server

Class representing a directory on a Styx server.

StyxDirectory(String, String, String, int) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Creates a new instance of StyxDirectory

StyxDirectory(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Creates a directory with default permissions (0777, rwxrwxrwx)

StyxDirectory(String, int) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxDirectory

Creates a directory with the given permissions

StyxException - Exception in uk.ac.rdg.resc.jstyx

StyxException() - Constructor for exception uk.ac.rdg.resc.jstyx.StyxException

Creates a new instance of StyxConnectionException

StyxException(String) - Constructor for exception uk.ac.rdg.resc.jstyx.StyxException

StyxFile - Class in uk.ac.rdg.resc.jstyx.server

Class representing a file (or directory) on a Styx server.

StyxFile(String, String, String, int, boolean, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxFile

StyxFile(String, int, boolean, boolean) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxFile

Creates a StyxFile with the default username and group

StyxFile(String, int) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxFile

StyxFile(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxFile

Creates a StyxFile with the default permissions (0666, rw-rw-rw-)

StyxFileChangeListener - Interface in uk.ac.rdg.resc.jstyx.server

Classes implementing this interface will be notified of changes to a StyxFile.

StyxFileClient - Class in uk.ac.rdg.resc.jstyx.server

Server's representation of a client of a StyxFile; created when a client succesfully opens a StyxFile

StyxFileClient(ProtocolSession, long, int) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxFileClient

A new StyxFileClient

StyxFileSystemModel - Class in uk.ac.rdg.resc.jstyx.client.browser

FileSystemModel is a TreeTableModel representing a hierarchical file system.

StyxFileSystemModel(StyxConnection) - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

StyxFileSystemView - Class in uk.ac.rdg.resc.jstyx.client

A FileSystemView for a Styx filesystem that can be used by a JFileChooser to select files on a remote Styx server

StyxFileSystemView(StyxConnection) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxFileSystemView

Creates a new instance of StyxFileSystemView to view the contents of the Styx server on the given StyxConnection.

StyxGet - Class in uk.ac.rdg.resc.jstyx.client

A simple application that downloads a file from a remote server and times the download, providing an indication of progress as it goes.

StyxGet(String, String) - Constructor for class uk.ac.rdg.resc.jstyx.client.StyxGet

StyxGridService - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Class representing a Styx Grid Service

StyxGridService(SGSConfig) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.StyxGridService

Creates a new StyxGridService.

StyxInterloper - Class in uk.ac.rdg.resc.jstyx.interloper

A StyxInterloper listens for Styx messages, then forwards them directly to another Styx server.

StyxInterloper(int, String, int) - Constructor for class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

Creates a new StyxInterloper.

StyxInterloperProtocolProvider - Class in uk.ac.rdg.resc.jstyx.interloper

Protocol provider for Styx interloper; handles client and server part

StyxInterloperProtocolProvider(ProtocolSession, InterloperListener) - Constructor for class uk.ac.rdg.resc.jstyx.interloper.StyxInterloperProtocolProvider

Constructor for client mode

StyxInterloperProtocolProvider(InetSocketAddress, InterloperListener) - Constructor for class uk.ac.rdg.resc.jstyx.interloper.StyxInterloperProtocolProvider

Constructor for server mode

StyxMessage - Class in uk.ac.rdg.resc.jstyx.messages

Abstract superclass for all Styx messages.

StyxMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Creates a new instance of StyxMessage.

StyxMessageDecoder - Class in uk.ac.rdg.resc.jstyx.messages

Decoder for StyxMessages, used by MINA framework

StyxMessageDecoder() - Constructor for class uk.ac.rdg.resc.jstyx.messages.StyxMessageDecoder

StyxMon - Class in uk.ac.rdg.resc.jstyx.interloper

TCPMon-like GUI application that displays all the messages going between a Styx client and server.

StyxMon(int, String, int) - Constructor for class uk.ac.rdg.resc.jstyx.interloper.StyxMon

Creates a new instance of StyxMon

StyxMonPopupMenu - Class in uk.ac.rdg.resc.jstyx.interloper

Pop-up menu that is shown when a user right-clicks on the table in the StyxMon.

StyxMonPopupMenu(StyxMonTableModel) - Constructor for class uk.ac.rdg.resc.jstyx.interloper.StyxMonPopupMenu

Creates a new instance of StyxMonPopUpMenu

StyxSecurityContext - Class in uk.ac.rdg.resc.jstyx.server

Describes security information for a Styx server.

StyxSecurityContext() - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

Creates a security context in which anonymous logins are allowed, SSL is not used and authentication is not supported

StyxSecurityContext(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

Creates a new StyxSecurityContext from a configuration file

StyxSecurityException - Exception in uk.ac.rdg.resc.jstyx.server

This exception is thrown when an error occurs configuring the security settings of a server

StyxSecurityException(String) - Constructor for exception uk.ac.rdg.resc.jstyx.server.StyxSecurityException

Creates a new instance of StyxSecurityException

styxServer - Variable in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

StyxServer - Class in uk.ac.rdg.resc.jstyx.server

A Styx server.

StyxServer(int, StyxDirectory) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxServer

Creates a Styx server that exposes the given directory under the given port.

StyxServer(int, ProtocolProvider) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxServer

Creates a Styx server that listens on the given port and uses the given protocol provider (This is used by the Styx interloper class) Connections are anonymous and unsecured.

StyxServer(int, StyxDirectory, String) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxServer

Creates a Styx server.

StyxServerProtocolHandler - Class in uk.ac.rdg.resc.jstyx.server

ProtocolHandler listener for a StyxServer (replaces StyxServerSessionListener from Netty).

StyxServerProtocolHandler(StyxDirectory, StyxSecurityContext) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolHandler

StyxServerProtocolProvider - Class in uk.ac.rdg.resc.jstyx.server

Protocol provider for a Styx server, used by MINA framework

StyxServerProtocolProvider(StyxDirectory, StyxSecurityContext) - Constructor for class uk.ac.rdg.resc.jstyx.server.StyxServerProtocolProvider

StyxURLConnection - Class in uk.ac.rdg.resc.jstyx.client.protocol.styx

Represents a connection to a Styx server that's been created with a URL

StyxURLConnection(URL) - Constructor for class uk.ac.rdg.resc.jstyx.client.protocol.styx.StyxURLConnection

Creates a new instance of StyxURLConnection

StyxUtils - Class in uk.ac.rdg.resc.jstyx

Set of constants and useful static methods for the Styx protocol

StyxUtils() - Constructor for class uk.ac.rdg.resc.jstyx.StyxUtils

supportsAuthentication() - Method in class uk.ac.rdg.resc.jstyx.server.StyxSecurityContext

swapSpace - Variable in class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

SYSTEM_FILE_SEPARATOR - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

SYSTEM_NEWLINE - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

T

tag - Variable in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

TattachMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to establish a connection

TattachMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TattachMessage

Creates a new TattachMessage.

TattachMessage(long, long, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TattachMessage

TattachMessage(long, String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TattachMessage

TauthMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to authorise a secure connection

TauthMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TauthMessage

Creates a new TauthMessage.

TauthMessage(long, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TauthMessage

TclunkMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to forget about a fid (i.e.

TclunkMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

Creates a new TclunkMessage.

TclunkMessage(long) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

TcreateMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to create and open a file on a Styx server

TcreateMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

Creates a new TcreateMessage.

TcreateMessage(long, String, int, boolean, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

TestClient - Class in uk.ac.rdg.resc.jstyx.client

Simple test harness for the JStyx library

TestClient() - Constructor for class uk.ac.rdg.resc.jstyx.client.TestClient

TextDisplayer - Class in uk.ac.rdg.resc.jstyx.client.browser

Displays the text from a file in a widget

TextDisplayer(String) - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.TextDisplayer

Creates new form TextDisplayer

TextStreamViewer - Class in uk.ac.rdg.resc.jstyx.gridservice.client

Simple (minimal) stream viewer for viewing a text stream

TextStreamViewer() - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.client.TextStreamViewer

TflushMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to abort a previously-sent message

TflushMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TflushMessage

Creates a new TflushMessage.

TflushMessage(int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TflushMessage

TimeDirectory - Class in uk.ac.rdg.resc.jstyx.gridservice.server

Directory containing files that are pertinent to the lifecycle of the Styx Grid Service instance.

TimeDirectory(StyxGridServiceInstance) - Constructor for class uk.ac.rdg.resc.jstyx.gridservice.server.TimeDirectory

Creates a new instance of TimeDirectory

tMessageReceived(StyxMessage) - Method in interface uk.ac.rdg.resc.jstyx.interloper.InterloperListener

Called when a Tmessage arrives from a client

tMessageReceived(StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxInterloper

Called when a Tmessage arrives from a client.

tMessageReceived(StyxMessage) - Method in class uk.ac.rdg.resc.jstyx.interloper.StyxMon

Required by the InterloperListener interface.

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RattachMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RauthMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RclunkMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RcreateMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RerrorMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RflushMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RopenMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RreadMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RremoveMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RversionMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RwalkMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RwriteMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.RwstatMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TattachMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TauthMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TclunkMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TcreateMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TflushMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TopenMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TreadMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TstatMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TversionMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

toFriendlyString() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

TopenMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to request that a Styx server checks file permissions and prepare a fid for I/O

TopenMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TopenMessage

Creates a new TopenMessage.

TopenMessage(long, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TopenMessage

TODO: Turn "mode" into a string, e.g.

toSort - Variable in class uk.ac.rdg.resc.jstyx.client.browser.MergeSort

toString() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

toString() - Method in class uk.ac.rdg.resc.jstyx.infernogrid.Sexpression

Recursive method to display the contents of this Sexpression

toString() - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

toString() - Method in class uk.ac.rdg.resc.jstyx.types.DirEntry

toString() - Method in class uk.ac.rdg.resc.jstyx.types.Qid

toString() - Method in class uk.ac.rdg.resc.jstyx.types.ULong

TreadMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to read data from a file

TreadMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TreadMessage

Creates a new TreadMessage.

TreadMessage(long, ULong, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TreadMessage

tree - Variable in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable

treeCollapsed(TreeExpansionEvent) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorerTreeModel

Required by TreeExpansionListener.

treeExpanded(TreeExpansionEvent) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSExplorerTreeModel

Required by TreeExpansionListener.

TreeTableModel - Interface in uk.ac.rdg.resc.jstyx.client.browser

TreeTableModel is the model used by a JTreeTable.

TreeTableModelAdapter - Class in uk.ac.rdg.resc.jstyx.client.browser

This is a wrapper class takes a TreeTableModel and implements the table model interface.

TreeTableModelAdapter(TreeTableModel, JTree) - Constructor for class uk.ac.rdg.resc.jstyx.client.browser.TreeTableModelAdapter

TremoveMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to delete a file from a Styx server

TremoveMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

Creates a new TremoveMessage.

TremoveMessage(long) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TremoveMessage

truncate() - Method in class uk.ac.rdg.resc.jstyx.server.StyxFileClient

TstatMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to enquire about the attributes of a file on a Styx server

TstatMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TstatMessage

Creates a new TstatMessage.

TstatMessage(long) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TstatMessage

This constructor should be called when constructing a TstatMessage from scratch

TversionMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to negotiate the protocol version and maximum message size of a Styx Connection

TversionMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TversionMessage

Creates a new TversionMessage.

TversionMessage() - Constructor for class uk.ac.rdg.resc.jstyx.messages.TversionMessage

Default constructor, sets version to "9P2000" and maximum message size to 8216 (so that 8192 bytes can be read or written with a Tread/Twrite)

TversionMessage(long) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TversionMessage

Creates a new TversionMessage, with the supplied maximum message size.

TversionMessage(long, String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TversionMessage

Creates a new TversionMessage, with the supplied maximum message size and version string.

TwalkMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to traverse a directory tree

TwalkMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

Creates a new TwalkMessage.

TwalkMessage(long, long, String) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwalkMessage

This constructor should be called when constructing a TwalkMessage from scratch

TwriteMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to write data to a file

TwriteMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

Creates a new TwriteMessage.

TwriteMessage(long, ULong, byte[]) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

Creates a new TwriteMessage that will write the given bytes to the file described by the given fid at the given offset.

TwriteMessage(long, ULong, byte[], int, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwriteMessage

Creates a new TwriteMessage that will write the given bytes to the file described by the given fid at the given offset.

TwstatMessage - Class in uk.ac.rdg.resc.jstyx.messages

Message sent to change the attributes of a file

TwstatMessage(int, short, int) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

Creates a new TwstatMessage.

TwstatMessage(long, DirEntry) - Constructor for class uk.ac.rdg.resc.jstyx.messages.TwstatMessage

type - Variable in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

U

uk.ac.rdg.resc.jstyx - package uk.ac.rdg.resc.jstyx

uk.ac.rdg.resc.jstyx.client - package uk.ac.rdg.resc.jstyx.client

uk.ac.rdg.resc.jstyx.client.browser - package uk.ac.rdg.resc.jstyx.client.browser

uk.ac.rdg.resc.jstyx.client.callbacks - package uk.ac.rdg.resc.jstyx.client.callbacks

uk.ac.rdg.resc.jstyx.client.protocol.styx - package uk.ac.rdg.resc.jstyx.client.protocol.styx

uk.ac.rdg.resc.jstyx.gridservice.client - package uk.ac.rdg.resc.jstyx.gridservice.client

uk.ac.rdg.resc.jstyx.gridservice.config - package uk.ac.rdg.resc.jstyx.gridservice.config

uk.ac.rdg.resc.jstyx.gridservice.server - package uk.ac.rdg.resc.jstyx.gridservice.server

uk.ac.rdg.resc.jstyx.gridservice.tutorial - package uk.ac.rdg.resc.jstyx.gridservice.tutorial

uk.ac.rdg.resc.jstyx.infernogrid - package uk.ac.rdg.resc.jstyx.infernogrid

uk.ac.rdg.resc.jstyx.interloper - package uk.ac.rdg.resc.jstyx.interloper

uk.ac.rdg.resc.jstyx.messages - package uk.ac.rdg.resc.jstyx.messages

uk.ac.rdg.resc.jstyx.server - package uk.ac.rdg.resc.jstyx.server

uk.ac.rdg.resc.jstyx.ssl - package uk.ac.rdg.resc.jstyx.ssl

uk.ac.rdg.resc.jstyx.tutorial - package uk.ac.rdg.resc.jstyx.tutorial

uk.ac.rdg.resc.jstyx.types - package uk.ac.rdg.resc.jstyx.types

ULong - Class in uk.ac.rdg.resc.jstyx.types

Unsigned long integer

ULong(byte[]) - Constructor for class uk.ac.rdg.resc.jstyx.types.ULong

Constructs a ULong from an array of 8 bytes in little-endian order

ULong(long) - Constructor for class uk.ac.rdg.resc.jstyx.types.ULong

upload(InputStream) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Uploads data from an InputStream to this file.

upload(File) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Uploads data from an local file to this file.

uploadAsync(InputStream) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Uploads data from an InputStream to this file.

uploadAsync(InputStream, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Uploads data from an InputStream to this file.

uploadAsync(File) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Uploads data from a local java.io.File to this file.

uploadAsync(File, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Uploads data from a local java.io.File to this file.

UploadCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback that is used when uploading a file to the server.

UploadCallback(CStyxFile, File, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.UploadCallback

UploadCallback(CStyxFile, InputStream, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.UploadCallback

uploadComplete(CStyxFile) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileChangeAdapter

Called after a file has been successfully uploaded

uploadComplete(CStyxFile) - Method in interface uk.ac.rdg.resc.jstyx.client.CStyxFileChangeListener

Called after a file has been successfully uploaded

uploadInputFiles() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Uploads the input files to the server.

uploadInputFilesAsync() - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.SGSInstanceClient

Uploads the input files to the server.

url - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

URLFile - Class in uk.ac.rdg.resc.jstyx.server

StyxFile that contains a URL.

URLFile(String) - Constructor for class uk.ac.rdg.resc.jstyx.server.URLFile

Creates a new instance of URLFile with read-write permissions for everyone (0666).

User - Class in uk.ac.rdg.resc.jstyx.server

Class representing the user at the other end of a Styx connection.

User(StyxSecurityContext, String, String, String) - Constructor for class uk.ac.rdg.resc.jstyx.server.User

Creates a new instance of User

useSSL - Variable in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSServerConfig

UTF8 - Static variable in class uk.ac.rdg.resc.jstyx.StyxUtils

utf8ToString(byte[]) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Converts an array of bytes in UTF-8 to a String

utf8ToString(byte[], int, int) - Static method in class uk.ac.rdg.resc.jstyx.StyxUtils

Converts an array of bytes in UTF-8 to a String

V

valueChanged(TreeSelectionEvent) - Method in class uk.ac.rdg.resc.jstyx.gridservice.client.PropertiesPanel

This is called when nodes in the SGSExplorer's tree have been selected or deselected.

valueForPathChanged(TreePath, Object) - Method in class uk.ac.rdg.resc.jstyx.client.browser.AbstractTreeTableModel

visibleRow - Variable in class uk.ac.rdg.resc.jstyx.client.browser.JTreeTable.TreeTableCellRenderer

W

walkFid() - Method in class uk.ac.rdg.resc.jstyx.client.callbacks.GetFidCallback

walkFid() - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets a new fid from the pool and walks it to the location of this file.

walkFidAsync(MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Gets a new fid from the pool and walks it to the location of this file.

WhoAmIFile - Class in uk.ac.rdg.resc.jstyx.tutorial

Simple custom Styx file that, when read, returns the IP address and local port of the client that is connected.

WhoAmIFile() - Constructor for class uk.ac.rdg.resc.jstyx.tutorial.WhoAmIFile

Creates a new instance of WhoAmIFile

write(byte[], long, boolean) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a block of data to the file at the given offset.

write(byte[], int, int, long, boolean) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a block of data to the file at the given offset.

write(int) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFileOutputStream

Writes the specified byte to the Styx file.

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.File

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.StdinFile

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSParamFile

The new value for the parameter must come in a single message (i.e.

write(ProtocolEncoderOutput) - Method in class uk.ac.rdg.resc.jstyx.messages.StyxMessage

Called by StyxMessageEncoder to send a message to the output

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.server.AsyncStyxFile

This simply calls write() in the contained StyxFile object.

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.server.FileOnDisk

Writes data to the underlying java.io.File.

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.server.InMemoryFile

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxDirectory

This always throws a StyxException as it is illegal to write to a directory

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.server.StyxFile

Writes data to this file.

write(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.server.URLFile

The new value for the URL must come in a single message (i.e.

write2(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

This method does the job of checking for URLs being written to the file.

writeAll(byte[], long) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a block of data to the file at the given offset.

writeAsync(String, long) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a string to the file at the given offset, with truncation.

writeAsync(String, long, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a string to the file at the given offset, with truncation.

writeAsync(byte[], long, boolean) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a chunk of data to the file at the given file offset.

writeAsync(byte[], long, boolean, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a chunk of data to the file at the given file offset.

writeAsync(byte[], int, int, long, boolean, MessageCallback) - Method in class uk.ac.rdg.resc.jstyx.client.CStyxFile

Writes a chunk of data to the file at the given file offset.

WriteCallback - Class in uk.ac.rdg.resc.jstyx.client.callbacks

Callback used when writing to a file (see CStyxFile.writeAsync())

WriteCallback(CStyxFile, byte[], int, int, long, boolean, MessageCallback) - Constructor for class uk.ac.rdg.resc.jstyx.client.callbacks.WriteCallback

writeData(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.File

This just writes the data to the underlying fileOnDisk

writeData(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile.StdinFile

This just writes the data to the current position in the stream and flushes the write.

writeData(StyxFileClient, long, int, ByteBuffer, boolean, int) - Method in class uk.ac.rdg.resc.jstyx.gridservice.server.SGSInputFile

Writes data to the underlying file or stream

Z

ZERO - Static variable in class uk.ac.rdg.resc.jstyx.client.browser.StyxFileSystemModel

ZERO - Static variable in class uk.ac.rdg.resc.jstyx.types.ULong

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